Florida says the case is the “last, best hope” to save the Apalachicola River region from destruction.

Georgia says Florida's arguments threaten to cause hundreds of millions of dollars in “real harm” to the Peach State.

Now, a federal appellate judge based in New Mexico will have to sort out the long-running battle between Florida and Georgia over water in the Apalachicola-Chattahoochee-Flint river system, which starts in Georgia and flows south into the Florida Panhandle.

Both sides filed briefs last week as they attempt to sway Senior U.S. Circuit Court of Appeals Judge Paul J. Kelly Jr. in the debate about whether limits should be placed on Georgia's water usage in the river system. Those briefs followed another set of briefs filed at the end of January.

Kelly was named as a special master in the case after a divided U.S. Supreme Court in June overturned a 2017 recommendation by another special master, Ralph Lancaster, who said Florida had not proved its case “by clear and convincing evidence” that imposing a cap on Georgia's water use would benefit the Apalachicola River region.

Writing for a 5-4 majority, Justice Stephen Breyer said Lancaster had “applied too strict a standard” in rejecting Florida's claim.

The Supreme Court decision, however, did not resolve the water war between the neighboring states, kicking it back for additional arguments. In the brief filed last week, Florida's attorneys said Kelly, who serves on the U.S. Court of Appeals for the 10th Circuit, should recommend that the Supreme Court issue a “decree equitably apportioning the waters” of the Apalachicola-Chattahoochee-Flint basin.

Florida contends, in part, that water usage by farmers in Southwest Georgia has reduced water flows in the river system, causing damage that includes major problems in the oyster industry in Apalachicola Bay.

“Ultimately, this is not a matter of simply dollar and cents, but of protecting and preserving irreplaceable natural resources,” Florida's brief said. “In their candid moments, Georgia's own officials have recognized all this. They understand the problem's source (agricultural withdrawals), its magnitude, and that it is solvable with exactly the type of common-sense steps Florida has suggested — with limited impact on Georgia's economy and farmers. Yet Georgia has failed to act because, as Special Master Lancaster recognized, it lacks the political incentive (or will) to do so. This action represents the last, best hope to change that, and save the Apalachicola region from destruction.”

But Georgia's attorneys, in a brief last week, accused Florida of “empty rhetoric” and said Florida had not proved that the benefits of a water limit would outweigh harm to Georgia.

“In remanding this case, the Supreme Court could not have been clearer that 'Florida will be entitled to a decree only if it is shown that 'the benefits of the [apportionment] substantially outweigh the harm that might result,' ” the Georgia attorneys wrote. “Not only has Florida failed to make that showing, but the record proves the opposite: the economic harms to Georgia from Florida's proposed cap would overwhelm any minimal and speculative benefits to Florida.”

From Florida's perspective, perhaps the highest-profile issue in the legal fight has been a decline in recent years of the oyster industry in Apalachicola Bay. Florida contends that a lack of freshwater flowing from the north has increased salinity in the bay and affected oyster production.

But Georgia is attacking that argument, contending that Florida allowed over-harvesting of oysters after the 2010 Deepwater Horizon oil spill in the Gulf of Mexico, causing lasting damage to the industry.

“Florida's case boils down to this: a largely self-inflicted injury to its $5-8-million-per-year oyster industry, which it now tries to leverage into a punitive and devastating cap that will cost Georgia hundreds of millions, if not billions, of dollars in real harm,” the Georgia brief said. “That is not the stuff of an equitable apportionment.”

Florida disputes such arguments and contends that increased salinity in the bay has led to more saltwater predators.

“The bay's oyster population can recover, but only if there is a surviving oyster population to facilitate reseeding from those areas,” Florida's brief last week said. “But if high salinities persist or recur, salt water predators will control the bay and recovery will not occur.”

Jim Saunders reports for the News Service of Florida.